Mini-Blast: Computer Systems to Search for the Pattern Sequences in the Bioinformatics Databases |
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Publicación: |
Programación Matemática y Software |
PDF(848 KB) |
Gennadiy Burlak, Christian Eduardo Martínez Guerrero, Enrique Merino Pérez |
Centro de Investigación en Ingeniería y Ciencias Aplicadas, Universidad Autónoma del Estado de Morelos, Cuernavaca, Mor. México. |
Recibido: 19 de septiembre de 2011 Aceptado:19 de noviembre de 2012 Publicado en línea:06 de noviembre de 2013 |
Abstract. The bioinformatics focus on developing and applying computationally intensive techniques to increase the understanding of biological processes. In this report we create the compact computer systems mini-blast and methagraph finding the dna sequences in the bioinformatics databases (dbs) placed in local or web configurations. Our system allows identify the gene sequences relating to new pattern (metagenome) that is not identified yet in such dbs containing data on known nucleotides. Such a task is quite expensive and time consuming operation; therefore for large genomes the parallel algorithms are required. We develop a graphics user-friendly interface (gui) that allows simple input the query data and representative statistical analysis in the output. Additionally, user can select the particular dbs for cases when a specific alignment is required. Although the package is developed in ms .net 3.5/4.0 visual c# system, it works with no limitations in linux in the mono framework. |
Keywords: Bioinformatics, computer finding DNA sequences, parallel algorithms, GUI. |
Gennadiy Burlak(Autor de correspondencia) |
Email:gburlak@uaem.mx |
Christian Eduardo Martínez Guerrero |
Email:cemartinezg@uaem.mx |